PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0001s0020.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 492aa    MW: 55820.8 Da    PI: 8.2012
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0001s0020.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix561.1e-1747123171
             trihelix   1 rWtkqevlaLiearremeerlr......rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                          rW+++e+l+L++a+++ +e+l+      r+  +  +We v++++++ g+er++ qC+++w  l ++ykk+ke++++ 
  Mapoly0001s0020.3.p  47 RWSQHETLVLVAAKKRQGEELSpaiprpRNLTADERWELVAAYCKANGCERNAYQCRKRWFALYGDYKKVKEWQRSS 123
                          8********************9444433346899****************************************985 PP

2trihelix50.94.1e-16217295172
             trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                          rW+ +e l L++a+++ e++++ +        ++  +We++s+++r  g+er++ qC+++w+ l +++k+i+e++k  t
  Mapoly0001s0020.3.p 217 RWSLHESLILLAAKKKQEDDSGMAPkarartvSADERWESISAHCRTNGCERNAYQCRKRWSALLGDFKRIREWQKLST 295
                          8**************9999999543344555699*****************************************9853 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.22440110IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.7E-443111IPR009057Homeodomain-like
SMARTSM007170.1544112IPR001005SANT/Myb domain
PfamPF138373.2E-1246126No hitNo description
PROSITE profilePS500907.155210281IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-4211281IPR009057Homeodomain-like
SMARTSM007170.34214283IPR001005SANT/Myb domain
PfamPF138372.3E-8216296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MMDEFRMSFF MEAGGEVVGD LGVDGEPVAV PIEQVDESAE RQNRNPRWSQ HETLVLVAAK  60
KRQGEELSPA IPRPRNLTAD ERWELVAAYC KANGCERNAY QCRKRWFALY GDYKKVKEWQ  120
RSSAETYWGM KNDRRRENRL PGTFDRVVFQ SMDSWLKISS DAQFDTPTRP DEGISSEIEQ  180
DVEGQELPDI ARGDGNSIVP RSEQTGDLGD KRYRNPRWSL HESLILLAAK KKQEDDSGMA  240
PKARARTVSA DERWESISAH CRTNGCERNA YQCRKRWSAL LGDFKRIREW QKLSTESYWL  300
MKNEKRKENK LPAIFDYEVF VNMDSWVGKR TGKKSGAAPE FLDCARPANG RLFPDVEHDR  360
EGHLEPVPLI GGCQRNTTLA PEMGPTLREE MPSDSTARKK RKRGMNGDAS DFKGQQLAAV  420
FKSSVKAMQA ALAENTQMQI QAHHTNIQAQ IEAHNLNSQL DRTQRKEQGE SLVGVLGKLA  480
EALGKIAEKL V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1396404ARKKRKRGM
2397402RKKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-38Trihelix family protein